Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s HindIII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_HindIII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6129098-SRR6129099-SRR6129100-SRR6129101-SRR6129102-SRR6129103-SRR6129104/__temp__                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  462,912,572
 Normal Paired: 233,378,241 (50.42%)
 Chimeric Paired: 166,585,241 (35.99%)
 Chimeric Ambiguous: 25,304,650 (5.47%)
 Unmapped: 37,644,440 (8.13%)
 Ligation Motif Present: 264,300,781 (57.10%)
Alignable (Normal+Chimeric Paired): 399,963,482 (86.40%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-14T09:42:18,750]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 283,937,377 (61.34%)
PCR Duplicates: 116,026,105 (25.06%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 548,363,382
Intra-fragment Reads: 43,143,487 (9.32% / 15.19%)
Below MAPQ Threshold: 33,612,639 (7.26% / 11.84%)
Hi-C Contacts: 207,181,251 (44.76% / 72.97%)
 Ligation Motif Present: 152,841,265  (33.02% / 53.83%)
 3' Bias (Long Range): 93% - 7%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 36,069,268  (7.79% / 12.70%)
Intra-chromosomal: 171,111,983  (36.96% / 60.26%)
Short Range (<20Kb): 61,638,967  (13.32% / 21.71%)
Long Range (>20Kb): 109,472,957  (23.65% / 38.56%)